====== Assessment course ====== === Notice board === * 4. september: The course summary lecture was added * 3. september: A link to the manual on Pasgear was added (see under heading Software) {{:crfm:03statisticsglm.xls|}} ===== Lectures ===== == August 23 - Monday == * {{:crfm:01global.fisheries.overview.ppt| Fisheries of the world - Global fisheries overview}} * {{:crfm:03biostatistics01.august.23.ppt| Biostatistics 1: Descriptive, measure of central tendency and measure of distribution}} == August 24 - Tuesday == * {{:crfm:fisheries.trends.in.the.caribbean.aug.20.ppt| Fisheries in the Caribbean - Regional overview}} * {{:crfm:alternative.approaches.to.assessment.ppt| Alternative approaches. Incorporation traditional knowledge}} * {{:crfm:04cohortdatastructure.ppt| Age/size patterns in fisheries data: Case history of the Icelandic cod}} * {{:crfm:03biostatistics02.ppt| Biostatistic 2: Confronting models with data}} == August 25 - Wednesday == * {{:crfm:01patternsofexploitation.ppt| Patterns of exploitation, industrial vs. small scale}} * {{:crfm:04thebasicequations.ppt| Principle of stock assessment, introduction to fundamental equation}} * {{:crfm:04thebasicequations.pdf| pdf format}} * {{:crfm:03biostatisticsbootstrapa.ppt| Biostatistic 3: Bootstrapping}} * {{:crfm:bootstrapping102.xls| An excel demonstration}} == August 26 - Thursday == * {{:crfm:01fisheriesmanagement.ppt| Fisheries and resource management, role of fisheries scientist}} * {{:crfm:04ageandgrowth.ppt| Age and growth}} * {{:crfm:gear.selectivity.2009.ppt| Gear selectivity}} * {{:crfm:03biostatistics04c.ppt| Biostatistics 4: General linear model}} == August 27 - Friday == * {{:crfm:01eafapproachandmpas.ppt| Ecosystem approach to fisheries management & Marine Protected Area}} == August 30 - Monday == * {{:crfm:02lifehistoriesandadaptation.ppt|Life history history traits & ecological adaptation}} * {{:crfm:cscforunucourseaug2010.ppt|Living Marine Resource Governance in the Wider Caribbean}} * {{:crfm:04mortality.ppt|Estimating mortality}} == August 31 - Tuesday == * 09:00 - 10:00 {{:crfm:02effectoffishing.ppt|Fishing effects on populations and communities}} * 10:20 - 12:00 {{:crfm:04yprmodels.ppt|Yield and spawning stock per recruit}} * 13:00 - 15:00 Growth excercise * 15:30 - 17:00 Pasgear: Overview & excercise on importing & exploring catch and effort data == September 1 - Wednesday == * 09:00 - 10:00 {{:crfm:02multispeciesconcepts.ppt|Ecological concepts in relation to multy-species fisheries, fishing down the food web}} * 10:20 - 12:00 {{:crfm:04surplusproductionmodel.ppt|Fitting surplus production model}} * 13:00 - 15:00 Mortality exercise * 15:30 - 17:00 Pasgear == September 2 - Thursday == * 09:00 - 10:00 {{:crfm:01fishandclimate.ppt|Fish and climate}} * Lake Victoria - East Africa * 10:20 - 12:00 {{:crfm:04statisticalfullmodels.ppt|Statistical catch at age}} * {{:crfm:xmodel.xls|The monster model in xCel speak}} * 13:00 - 16:00 Surplus production excercise * 16:00 - 17:00 Discussion on intersessional projects == September 3 - Friday == * 09:00 - 10:00 {{:crfm:03biostatisticssampling.ppt|Sampling theory and sampling design}} * 10:20 - 12:00 Catchup on practicals * 13:00 - 14:00 {{:crfm:crfmbarbadossummary.ppt| Summary}} * 14:00 - 16:30 Discussions - next steps (intersessional excercises & 2nd meeting) * 16:30 - 17:00 Closing ===== Practicals ===== == August 23 - Monday == * {{:crfm:01exceltipsandtricks.xls| Biostatistics: Excel tips and tricks}} == August 24 & 25 - Tuesday & Wednesday == * {{:crfm:biostatistics02.doc| Biostatistics: Confronting models with data}} * {{:crfm:02statistics.xls| The Excel spreadsheet}} == August 26 & 27 - Thursday & Friday, 1st week == * {{:crfm:biostatistics03glm.doc| Biostatistics: Standardizing catch rates (cpue)}} * {{xxx.xls | the data }} - the access to the file is not available from this open site == August 30 & 31 - Monday & Tuesday == * **Storing and exploring data using Pasgear 2:** PASGEAR 2 is a customised data base package primarily intended for experimental or artisanal fishery data. It is a tool that neatly and quickly lets you store and analyse fishery data from various survey designs. The software is free and can be downloded from [[http://www.imr.no/forskning/bistandsarbeid/data/pasgear_2/en| this site]]. * {{:crfm:pasgear2workshop.ppt| Introduction to Pasgear}} * **Estimating growth (Linf and k) ** * {{:crfm:growthlab.doc| The document}} * {{:crfm:growthlabpart1.xls| Length and age data}} * {{:crfm:icelandic_cod_1985-2010_survey_lfq.xls| Length frequency data}} == September 1 - Wednesday == * {{:crfm:mortality.doc| Estimating mortality}} *{{:crfm:mortalitylab.xls| The spreadsheet}} == September 2 - Thursday == * {{:crfm:stockproduction2.xls| Stock production model}} * * {{:crfm:stockproduction4.xls| Solution: Distribution 2}} * {{:crfm:surplusproductionexercise.doc| Further considerations}} ===== Data files ===== * {{:crfm:xxx| pasgear flyfish cpue}} - the access to the file is not available from this open site ===== Fish stock assessment - textbooks (some recomendations) ===== [[ftp://ftp.fao.org/docrep/fao/w5449e/w5449e00.pdf | Sparre, P.; Venema, S.C. 1998. Introduction to tropical fish stock assessment. Part 1. Manual. FAO Fisheries Technical Paper. No. 306.1, Rev. 2. Rome, FAO. 1998. 407p.]] Malcom Haddon 2001. Modelling and quantitative methods in fisheries. Chapman & Hall/CRC. 406p. ISBN 1584881771, 9781584881773 R. Hilborn and C.J. Walters 1992. Quantitative fisheries stock assessment: Choice, dynamics and uncertainty. Chapman & Hall, London. ISBN 0-412-02271-0 Carl J. Walters & Steven J. D. Martell 2004. Fisheries Ecology and Management. Princeton University Press. ISBN13: 978-0-691-11545-0 S. Jennings, M. Kaiser and J. Renolds. 2001. Marine Fisheries ecology. ===== Software ===== * **Pasgear** * [[http://www.imr.no/forskning/bistandsarbeid/data/pasgear_2/en|Download site (same as referred to in a link above)]] * {{:crfm:pg2introductionandmanual.pdf| Pasgear - Introduction and manual}} * {{:crfm:pasgear2workshop.ppt| Introduction to Pasgear (same as referred to in a link above}} [[http://tutor-web.net| Tutor-Web]]